TY - STD TI - Nagafuchi Y, Shoda H, Fujio K: Immune profiling and precision medicine in systemic lupus erythematosus. Cells 2019, 8(2). ID - ref1 ER - TY - JOUR AU - Takeshima, Y. AU - Iwasaki, Y. AU - Fujio, K. AU - Yamamoto, K. PY - 2019 DA - 2019// TI - Metabolism as a key regulator in the pathogenesis of systemic lupus erythematosus JO - Semin Arthritis Rheum VL - 48 UR - https://doi.org/10.1016/j.semarthrit.2019.04.006 DO - 10.1016/j.semarthrit.2019.04.006 ID - Takeshima2019 ER - TY - JOUR AU - Thomas, G. AU - Mancini, J. AU - Jourde-Chiche, N. AU - Sarlon, G. AU - Amoura, Z. AU - Harle, J. R. PY - 2014 DA - 2014// TI - Mortality associated with systemic lupus erythematosus in France assessed by multiple-cause-of-death analysis JO - Arthritis Rheumatol VL - 66 UR - https://doi.org/10.1002/art.38731 DO - 10.1002/art.38731 ID - Thomas2014 ER - TY - JOUR AU - Yee, C. S. AU - Su, L. AU - Toescu, V. AU - Hickman, R. AU - Situnayake, D. AU - Bowman, S. PY - 2015 DA - 2015// TI - Birmingham SLE cohort: outcomes of a large inception cohort followed for up to 21 years JO - Rheumatology (Oxford) VL - 54 UR - https://doi.org/10.1093/rheumatology/keu412 DO - 10.1093/rheumatology/keu412 ID - Yee2015 ER - TY - JOUR AU - Franklyn, K. AU - Lau, C. S. AU - Navarra, S. V. AU - Louthrenoo, W. AU - Lateef, A. AU - Hamijoyo, L. PY - 2016 DA - 2016// TI - Definition and initial validation of a lupus low disease activity state (LLDAS) JO - Ann Rheum Dis VL - 75 UR - https://doi.org/10.1136/annrheumdis-2015-207726 DO - 10.1136/annrheumdis-2015-207726 ID - Franklyn2016 ER - TY - JOUR AU - Steiman, A. J. AU - Gladman, D. D. AU - Ibanez, D. AU - Urowitz, M. B. PY - 2010 DA - 2010// TI - Prolonged serologically active clinically quiescent systemic lupus erythematosus: frequency and outcome JO - J Rheumatol VL - 37 UR - https://doi.org/10.3899/jrheum.100007 DO - 10.3899/jrheum.100007 ID - Steiman2010 ER - TY - JOUR AU - Bennett, L. AU - Palucka, A. K. AU - Arce, E. AU - Cantrell, V. AU - Borvak, J. AU - Banchereau, J. PY - 2003 DA - 2003// TI - Interferon and granulopoiesis signatures in systemic lupus erythematosus blood JO - J Exp Med VL - 197 UR - https://doi.org/10.1084/jem.20021553 DO - 10.1084/jem.20021553 ID - Bennett2003 ER - TY - JOUR AU - Baechler, E. C. AU - Batliwalla, F. M. AU - Karypis, G. AU - Gaffney, P. M. AU - Ortmann, W. A. AU - Espe, K. J. PY - 2003 DA - 2003// TI - Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.0337679100 DO - 10.1073/pnas.0337679100 ID - Baechler2003 ER - TY - JOUR AU - Chaussabel, D. AU - Quinn, C. AU - Shen, J. AU - Patel, P. AU - Glaser, C. AU - Baldwin, N. PY - 2008 DA - 2008// TI - A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus JO - Immunity VL - 29 UR - https://doi.org/10.1016/j.immuni.2008.05.012 DO - 10.1016/j.immuni.2008.05.012 ID - Chaussabel2008 ER - TY - JOUR AU - Chiche, L. AU - Jourde-Chiche, N. AU - Whalen, E. AU - Presnell, S. AU - Gersuk, V. AU - Dang, K. PY - 2014 DA - 2014// TI - Modular transcriptional repertoire analyses of adults with systemic lupus erythematosus reveal distinct type I and type II interferon signatures JO - Arthritis Rheumatol VL - 66 UR - https://doi.org/10.1002/art.38628 DO - 10.1002/art.38628 ID - Chiche2014 ER - TY - JOUR AU - El-Sherbiny, Y. M. AU - Psarras, A. AU - Md Yusof, M. Y. AU - Hensor, E. M. A. AU - Tooze, R. AU - Doody, G. PY - 2018 DA - 2018// TI - A novel two-score system for interferon status segregates autoimmune diseases and correlates with clinical features JO - Sci Rep VL - 8 UR - https://doi.org/10.1038/s41598-018-24198-1 DO - 10.1038/s41598-018-24198-1 ID - El-Sherbiny2018 ER - TY - JOUR AU - Md Yusof, M. Y. AU - Psarras, A. AU - El-Sherbiny, Y. M. AU - Hensor, E. M. A. AU - Dutton, K. AU - Ul-Hassan, S. PY - 2018 DA - 2018// TI - Prediction of autoimmune connective tissue disease in an at-risk cohort: prognostic value of a novel two-score system for interferon status JO - Ann Rheum Dis VL - 77 UR - https://doi.org/10.1136/annrheumdis-2018-213386 DO - 10.1136/annrheumdis-2018-213386 ID - Md Yusof2018 ER - TY - JOUR AU - Banchereau, R. AU - Hong, S. AU - Cantarel, B. AU - Baldwin, N. AU - Baisch, J. AU - Edens, M. PY - 2016 DA - 2016// TI - Personalized immunomonitoring uncovers molecular networks that stratify lupus patients JO - Cell VL - 165 UR - https://doi.org/10.1016/j.cell.2016.05.057 DO - 10.1016/j.cell.2016.05.057 ID - Banchereau2016 ER - TY - STD TI - Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, et al. Comprehensive functional genomic resource and integrative model for the human brain. Science. 2018:362(6420). ID - ref14 ER - TY - JOUR AU - Shi, L. AU - Zhang, Z. AU - Yu, A. M. AU - Wang, W. AU - Wei, Z. AU - Akhter, E. PY - 2014 DA - 2014// TI - The SLE transcriptome exhibits evidence of chronic endotoxin exposure and has widespread dysregulation of non-coding and coding RNAs JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0093846 DO - 10.1371/journal.pone.0093846 ID - Shi2014 ER - TY - JOUR AU - Rai, R. AU - Chauhan, S. K. AU - Singh, V. V. AU - Rai, M. AU - Rai, G. PY - 2016 DA - 2016// TI - RNA-seq analysis reveals unique transcriptome signatures in systemic lupus erythematosus patients with distinct autoantibody specificities JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0166312 DO - 10.1371/journal.pone.0166312 ID - Rai2016 ER - TY - JOUR AU - Parikh, S. V. AU - Malvar, A. AU - Song, H. AU - Alberton, V. AU - Lococo, B. AU - Vance, J. PY - 2015 DA - 2015// TI - Characterising the immune profile of the kidney biopsy at lupus nephritis flare differentiates early treatment responders from non-responders JO - Lupus Sci Med VL - 2 UR - https://doi.org/10.1136/lupus-2015-000112 DO - 10.1136/lupus-2015-000112 ID - Parikh2015 ER - TY - JOUR AU - Stubbington, M. J. T. AU - Rozenblatt-Rosen, O. AU - Regev, A. AU - Teichmann, S. A. PY - 2017 DA - 2017// TI - Single-cell transcriptomics to explore the immune system in health and disease JO - Science VL - 358 UR - https://doi.org/10.1126/science.aan6828 DO - 10.1126/science.aan6828 ID - Stubbington2017 ER - TY - JOUR AU - Papalexi, E. AU - Satija, R. PY - 2018 DA - 2018// TI - Single-cell RNA sequencing to explore immune cell heterogeneity JO - Nat Rev Immunol VL - 18 UR - https://doi.org/10.1038/nri.2017.76 DO - 10.1038/nri.2017.76 ID - Papalexi2018 ER - TY - JOUR AU - Arazi, A. AU - Rao, D. A. AU - Berthier, C. C. AU - Davidson, A. AU - Liu, Y. AU - Hoover, P. J. PY - 2019 DA - 2019// TI - The immune cell landscape in kidneys of patients with lupus nephritis JO - Nat Immunol VL - 20 UR - https://doi.org/10.1038/s41590-019-0398-x DO - 10.1038/s41590-019-0398-x ID - Arazi2019 ER - TY - JOUR AU - Jenks, S. A. AU - Cashman, K. S. AU - Zumaquero, E. AU - Marigorta, U. M. AU - Patel, A. V. AU - Wang, X. PY - 2018 DA - 2018// TI - Distinct effector B cells induced by unregulated toll-like receptor 7 contribute to pathogenic responses in systemic lupus erythematosus JO - Immunity VL - 49 UR - https://doi.org/10.1016/j.immuni.2018.08.015 DO - 10.1016/j.immuni.2018.08.015 ID - Jenks2018 ER - TY - JOUR AU - Der, E. AU - Suryawanshi, H. AU - Morozov, P. AU - Kustagi, M. AU - Goilav, B. AU - Ranabothu, S. PY - 2019 DA - 2019// TI - Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways JO - Nat Immunol VL - 20 UR - https://doi.org/10.1038/s41590-019-0386-1 DO - 10.1038/s41590-019-0386-1 ID - Der2019 ER - TY - JOUR AU - Bentham, J. AU - Morris, D. L. AU - Graham, D. S. C. AU - Pinder, C. L. AU - Tombleson, P. AU - Behrens, T. W. PY - 2015 DA - 2015// TI - Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus JO - Nat Genet VL - 47 UR - https://doi.org/10.1038/ng.3434 DO - 10.1038/ng.3434 ID - Bentham2015 ER - TY - JOUR AU - Mohan, C. AU - Putterman, C. PY - 2015 DA - 2015// TI - Genetics and pathogenesis of systemic lupus erythematosus and lupus nephritis JO - Nat Rev Nephrol VL - 11 UR - https://doi.org/10.1038/nrneph.2015.33 DO - 10.1038/nrneph.2015.33 ID - Mohan2015 ER - TY - JOUR AU - Tsokos, G. C. AU - Lo, M. S. AU - Costa Reis, P. AU - Sullivan, K. E. PY - 2016 DA - 2016// TI - New insights into the immunopathogenesis of systemic lupus erythematosus JO - Nat Rev Rheumatol VL - 12 UR - https://doi.org/10.1038/nrrheum.2016.186 DO - 10.1038/nrrheum.2016.186 ID - Tsokos2016 ER - TY - JOUR AU - Chen, L. AU - Morris, D. L. AU - Vyse, T. J. PY - 2017 DA - 2017// TI - Genetic advances in systemic lupus erythematosus: an update JO - Curr Opin Rheumatol VL - 29 UR - https://doi.org/10.1097/BOR.0000000000000411 DO - 10.1097/BOR.0000000000000411 ID - Chen2017 ER - TY - JOUR AU - Zhang, Z. AU - Shi, L. AU - Song, L. AU - Maurer, K. AU - Petri, M. A. AU - Sullivan, K. E. PY - 2018 DA - 2018// TI - Overall downregulation of mRNAs and enrichment of H3K4me3 change near genome-wide association study signals in systemic lupus erythematosus: cell-specific effects JO - Front Immunol VL - 9 UR - https://doi.org/10.3389/fimmu.2018.00497 DO - 10.3389/fimmu.2018.00497 ID - Zhang2018 ER - TY - JOUR AU - Farh, K. K. AU - Marson, A. AU - Zhu, J. AU - Kleinewietfeld, M. AU - Housley, W. J. AU - Beik, S. PY - 2015 DA - 2015// TI - Genetic and epigenetic fine mapping of causal autoimmune disease variants JO - Nature VL - 518 UR - https://doi.org/10.1038/nature13835 DO - 10.1038/nature13835 ID - Farh2015 ER - TY - JOUR AU - Ishigaki, K. AU - Kochi, Y. AU - Suzuki, A. AU - Tsuchida, Y. AU - Tsuchiya, H. AU - Sumitomo, S. PY - 2017 DA - 2017// TI - Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis JO - Nat Genet VL - 49 UR - https://doi.org/10.1038/ng.3885 DO - 10.1038/ng.3885 ID - Ishigaki2017 ER - TY - JOUR AU - Panousis, N. I. AU - Bertsias, G. K. AU - Ongen, H. AU - Gergianaki, I. AU - Tektonidou, M. G. AU - Trachana, M. PY - 2019 DA - 2019// TI - Combined genetic and transcriptome analysis of patients with SLE: distinct, targetable signatures for susceptibility and severity JO - Ann Rheum Dis VL - 78 UR - https://doi.org/10.1136/annrheumdis-2018-214379 DO - 10.1136/annrheumdis-2018-214379 ID - Panousis2019 ER - TY - JOUR AU - Davenport, E. E. AU - Amariuta, T. AU - Gutierrez-Arcelus, M. AU - Slowikowski, K. AU - Westra, H. J. AU - Luo, Y. PY - 2018 DA - 2018// TI - Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial JO - Genome Biol VL - 19 UR - https://doi.org/10.1186/s13059-018-1560-8 DO - 10.1186/s13059-018-1560-8 ID - Davenport2018 ER - TY - JOUR AU - Sakurai, K. AU - Ishigaki, K. AU - Shoda, H. AU - Nagafuchi, Y. AU - Tsuchida, Y. AU - Sumitomo, S. PY - 2018 DA - 2018// TI - HLA-DRB1 shared epitope alleles and disease activity are correlated with reduced T cell receptor repertoire diversity in CD4+ T cells in rheumatoid arthritis JO - J Rheumatol VL - 45 UR - https://doi.org/10.3899/jrheum.170909 DO - 10.3899/jrheum.170909 ID - Sakurai2018 ER - TY - JOUR AU - Liu, X. AU - Zhang, W. AU - Zhao, M. AU - Fu, L. AU - Liu, L. AU - Wu, J. PY - 2019 DA - 2019// TI - T cell receptor beta repertoires as novel diagnostic markers for systemic lupus erythematosus and rheumatoid arthritis JO - Ann Rheum Dis VL - 78 UR - https://doi.org/10.1136/annrheumdis-2019-215442 DO - 10.1136/annrheumdis-2019-215442 ID - Liu2019 ER - TY - JOUR AU - Bashford-Rogers, R. J. M. AU - Bergamaschi, L. AU - McKinney, E. F. AU - Pombal, D. C. AU - Mescia, F. AU - Lee, J. C. PY - 2019 DA - 2019// TI - Analysis of the B cell receptor repertoire in six immune-mediated diseases JO - Nature VL - 574 UR - https://doi.org/10.1038/s41586-019-1595-3 DO - 10.1038/s41586-019-1595-3 ID - Bashford-Rogers2019 ER -