Skip to main content

Table 1 Useful resources and databases related to QTL

From: Elucidation of disease etiology by trans-layer omics analysis

Name

Data

Description

URL

Reference

GTEx

eQTL, sQTL

The project examining 15,201 RNA-sequencing samples from 49 tissues and whole-genome sequencing of 838 donors.

https://gtexportal.org/home/

[8, 9]

DICE

eQTL

The resource of eQTL considering all human immune cell types.

https://dice-database.org/

[10]

Immugen

eQTL

The resource of eQTL neutrophils and splenic CD4+ T cells across a panel of 40 mouse inbred strains.

http://www.immgen.org/

[11]

eQTLgen

eQTL

The consortium which incorporates 37 eQTL datasets for the blood from 31,684 individuals.

https://www.eqtlgen.org/

[12]

PsychENCODE

eQTL

The consortium which generates a comprehensive online resource for the adult brain across 1866 individuals.

http://resource.psychencode.org/

[13]

eQTL Catalogue

eQTL

The database which contains quality controlled, uniformly re-computed QTLs from 19 eQTL publications.

https://www.ebi.ac.uk/eqtl/

[14]

SomaLogic serum pQTL

pQTL

The serum pQTL summary statistics form 3301 European healthy samples (INTERVAL study).

http://www.phpc.cam.ac.uk/ceu/proteins/

[15]

mQTLdb

metylation QTL

The methylation QTL summary statistics of 1000 mother-child pairs at serial time points across the life-course (ARIES).

http://www.mqtldb.org/

[16]

QTLbase

Various QTLs

The database compiling genome-wide QTL summary statistics for human molecular traits across > 70 tissue/cell types.

http://mulinlab.org/qtlbase

[17]