Table 1 Useful resources and databases related to QTL
From: Elucidation of disease etiology by trans-layer omics analysis
| Name | Data | Description | URL | Reference |
|---|---|---|---|---|
| GTEx | eQTL, sQTL | The project examining 15,201 RNA-sequencing samples from 49 tissues and whole-genome sequencing of 838 donors. | https://gtexportal.org/home/ | [8, 9] |
| DICE | eQTL | The resource of eQTL considering all human immune cell types. | https://dice-database.org/ | [10] |
| Immugen | eQTL | The resource of eQTL neutrophils and splenic CD4+ T cells across a panel of 40 mouse inbred strains. | http://www.immgen.org/ | [11] |
| eQTLgen | eQTL | The consortium which incorporates 37 eQTL datasets for the blood from 31,684 individuals. | https://www.eqtlgen.org/ | [12] |
| PsychENCODE | eQTL | The consortium which generates a comprehensive online resource for the adult brain across 1866 individuals. | http://resource.psychencode.org/ | [13] |
| eQTL Catalogue | eQTL | The database which contains quality controlled, uniformly re-computed QTLs from 19 eQTL publications. | https://www.ebi.ac.uk/eqtl/ | [14] |
| SomaLogic serum pQTL | pQTL | The serum pQTL summary statistics form 3301 European healthy samples (INTERVAL study). | http://www.phpc.cam.ac.uk/ceu/proteins/ | [15] |
| mQTLdb | metylation QTL | The methylation QTL summary statistics of 1000 mother-child pairs at serial time points across the life-course (ARIES). | http://www.mqtldb.org/ | [16] |
| QTLbase | Various QTLs | The database compiling genome-wide QTL summary statistics for human molecular traits across > 70 tissue/cell types. | http://mulinlab.org/qtlbase | [17] |