Table 2 Useful resources and tools related to epigenetic data

ENCODE

The project which aims to catalog all functional elements genome of humans and mice by various assays.

https://www.encodeproject.org/

[47, 48]

Roadmap Epigenomics

The project which aims to produce a public resource of human epigenomic data.

http://www.roadmapepigenomics.org/

[49]

BLUEPRINT

The European project which aims to generate epigenomic maps of blood cells.

https://www.blueprint-epigenome.eu

[50]

DEEP

The German projects which aim to map and functionally interpret reference epigenomes in normal and diseased states.

http://www.deutsches-epigenom-programm.de

[51]

DeepBlue

The data server which provides epigenetic data collection including data from the above four projects.

https://deepblue.mpi-inf.mpg.de

[52]

FANTOM

The consortium to assign functional annotations to the full-length cDNAs collected during the Mouse Encyclopedia Project at RIKEN.

https://fantom.gsc.riken.jp/

[53]

CHIP-ATLAS

The database for visualizing and making use of public ChIP-seq data submitted to the SRA (Sequence Read Archives).

https://chip-atlas.org/

[54]

HaploReg

The tool to annotate haplotype blocks containing target genetic variants with epigenetic data.

https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php

[55]

RegulomeDB

The tool to annotate genome regions with epigenetic and eQTL data and classify them by function.

https://regulomedb.org/regulome-search/

[56]