Table 1 Genome wide significant signals and the closest gene associated
Locus | SNP | Closest gene |
|---|---|---|
PCT1 (Socransky Trait) | ||
16q11.2 | rs1156327 | CLEC19A (C-type lectin domain family 19 member A) |
14q21 | rs3811273 | TRA (Transfer gene) |
12q14 | rs17184007 | GGTA2P (Glycoprotein, Alpha- Galactosyltransferase 2 Pseudogene) |
13q32.3 | rs9557237 | TM9SF2 (Transmembrane 9 Superfamily Member 2) |
1q12 | rs1633266 | IFI16 (Interferon, Gamma-Inducible Protein 16) |
3q12 | rs17718700 | RBMS3 (RNA Binding Motif Single Stranded Interacting Protein 3) |
PCT3 (Aa Trait) | ||
4p15.33 | rs4074082 | C1QTNF7 (C1q and tumour necrosis factor-related protein 7) |
8q24.3 | rs9772881 | TSNARE (T-SNARE Domain Containing) |
PCT4 (Mixed Infection) | ||
7q21.1 | rs10232172 | HPVC1 (Human Papillomavirus (type 18) E5 Central Sequence Like 1) |
PCT5(Pg Trait) | ||
12q14 | rs7135417 | SLC15A4 (Solute Carrier Family 15 Member 4) |
11q14 | rs6488099 | PKP2 (plakophilin 2) |
15q24 | Rs904310 | SNRPN (Small Nuclear Ribonucleoprotein Polypeptide N) |